Bluelake automation

Note

The API has changed from Bluelake 1.6 to 2.0, for details , see What are the differences between the API of Bluelake 1.6 and 2.0?.

The bluelake Python package provides a programmatic interface to the LUMICKS Bluelake software. It is available on LUMICKS C-Trap and m-Trap computers running Bluelake, and can be used to automate workflows.

This package is complemented by lumicks.pylake, a Python package that makes it easier to work with Bluelake’s exported HDF5 files.

User Guide

• Tutorial
  • About Python Automation in Bluelake
  • Running Your First Script
  • Some Basic Bluelake Automation
  • Further Resources
• Frequently Asked Questions
  • I’m importing functions from a Python module, but when I change the module, Bluelake doesn’t see the changes
  • What are the differences between the API of Bluelake 1.6 and 2.0?

Examples

• Components
  • Confocal
  • Fluidics
  • Microstage
  • Power
  • Shutters
  • Timeline
  • Traps
• Workflow
  • Automated bead catching: 1 bead
  • Automated bead catching: 2 beads
  • DNA fishing
  • Catch 2 beads and fish for DNA
  • FRAP (fluorescence recovery after photobleaching)

Reference Docs

• API Reference
  • Mirror control
  • Telescope control
  • Nanostage control
  • Shutter control
  • Stage control
  • Fluidics control
  • Power control
  • Camera
  • Timeline
  • Confocal
  • Focus Lock
  • Force feedback
  • Miscellaneous
• Deprecated API
  • Trap steering